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Snakemake 9.11.6.dev19 documentation

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Snakemake 9.11.6.dev19 documentation

Homepage Plugin catalog Workflow catalog Wrappers API docs

Getting started

Installation
Migration between Snakemake versions
Best practices
Tutorial: General use
Tutorial: Interaction, Visualization, and Reporting with Snakemake

Executing workflows

Command line interface
Job Grouping
Between workflow caching
Interoperability
Monitoring

Defining workflows

Writing Workflows
Snakefiles and Rules
Configuration
Modularization
Storage support
Utils
Distribution and Reproducibility
Reports
Automatically generating unit tests
Integrating foreign workflow management systems

Project Info

Citing and Citations
More Resources
Frequently Asked Questions
Contributing
Codebase and architecture
Credits
Changelog
License

Snakemake 9.11.6.dev19 documentation

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